WGS of Escherichia coli HS - SRA

SRX7658408: WGS of Escherichia coli HS
1 ILLUMINA (Illumina HiSeq 2500) run: 5.7M spots, 1.7G bases, 818.1Mb downloads

Design: KAPA Hyper was used for DNA library prep for paired-end whole genome Illumina sequencing.

Submitted by: Institute for Genome Sciences, University of Maryland, Baltimore

Study: Evaluation of a high-throughput, cost-effective Illumina library preparation kit

PRJNA575185 • SRP246383 • All experiments • All runs

show Abstracthide Abstract

As part of the Genomic Centers for Infectious Diseases (GCID) Technology Core Project (NIAID 2U19 AI110820-06), the iGenomeX Riptide high throughput rapid library prep kit for Illumina sequencing was evaluated as compared to KAPA Hyper and NEBNext Ultra kits. Read composition, reference-guided mapping, and de novo assemblies were assessed across diverse pathogens. The study samples include bacteria (Acinetobacter, Escherichia, Klebsiella, and Shigella), plasmid (pB171), filarial nematode (Brugia), apicomplexan parasites (Plasmodium, Cryptosporidium, Theileria), and fungus (Aspergillus) as well as metagenomic data.

Sample:

SAMN02604037 • SRS6087289 • All experiments • All runs

Organism: Escherichia coli HS

Library:

Name: IL100117483

Instrument: Illumina HiSeq 2500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 5.7M spots, 1.7G bases, 818.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR10997234	5,679,327	1.7G	818.1Mb	2020-01-31

ID:: 9992606

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity